Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V63_RS10285 Genome accession   NZ_CP130545
Coordinates   2086924..2087319 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA05-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2081924..2092319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V63_RS10260 thiE 2082523..2083164 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  Q3V63_RS10265 thiM 2083166..2083957 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  Q3V63_RS10270 thiD 2083941..2084771 (-) 831 WP_234718397.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V63_RS10275 tenA 2084764..2085453 (-) 690 WP_000396077.1 thiaminase II -
  Q3V63_RS10280 sceD 2085840..2086535 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  Q3V63_RS10285 ssb 2086924..2087319 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V63_RS10290 - 2087513..2087953 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V63_RS10295 fabZ 2088012..2088452 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V63_RS10300 murA 2088486..2089751 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V63_RS10305 - 2089862..2090095 (-) 234 WP_000384523.1 DUF1146 family protein -
  Q3V63_RS10310 - 2090227..2090319 (-) 93 WP_001790611.1 hypothetical protein -
  Q3V63_RS10315 - 2090657..2091061 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=860153 Q3V63_RS10285 WP_000932694.1 2086924..2087319(-) (ssb) [Staphylococcus aureus strain SA05-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=860153 Q3V63_RS10285 WP_000932694.1 2086924..2087319(-) (ssb) [Staphylococcus aureus strain SA05-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992