Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q3V63_RS02455 Genome accession   NZ_CP130545
Coordinates   524575..525144 (+) Length   189 a.a.
NCBI ID   WP_000872882.1    Uniprot ID   A0A7U7EXA1
Organism   Staphylococcus aureus strain SA05-SX     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 519575..530144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V63_RS02430 cysE 520788..521435 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  Q3V63_RS02435 cysS 521419..522819 (+) 1401 WP_000631969.1 cysteine--tRNA ligase -
  Q3V63_RS02440 - 522812..523216 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  Q3V63_RS02445 rlmB 523224..523970 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3V63_RS02450 - 523970..524494 (+) 525 WP_000664737.1 NYN domain-containing protein -
  Q3V63_RS02455 sigH 524575..525144 (+) 570 WP_000872882.1 sigma-70 family RNA polymerase sigma factor Regulator
  Q3V63_RS02460 rpmG 525259..525402 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q3V63_RS02465 secE 525458..525640 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q3V63_RS02470 nusG 525653..526201 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q3V63_RS02475 rplK 526382..526804 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q3V63_RS02480 rplA 527012..527704 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q3V63_RS02485 rplJ 527976..528476 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  Q3V63_RS02490 rplL 528519..528887 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q3V63_RS02495 - 529062..529670 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.91 Da        Isoelectric Point: 9.4170

>NTDB_id=860121 Q3V63_RS02455 WP_000872882.1 524575..525144(+) (sigH) [Staphylococcus aureus strain SA05-SX]
MKYDLTTQDSTIKRNNSINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=860121 Q3V63_RS02455 WP_000872882.1 524575..525144(+) (sigH) [Staphylococcus aureus strain SA05-SX]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATTCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

100

100

1
  sigH Staphylococcus aureus MW2

97.884

100

0.979