Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V85_RS10815 Genome accession   NZ_CP130544
Coordinates   2190350..2190745 (-) Length   131 a.a.
NCBI ID   WP_048665209.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA06-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2185350..2195745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V85_RS10790 thiE 2185950..2186591 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  Q3V85_RS10795 thiM 2186593..2187384 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  Q3V85_RS10800 thiD 2187368..2188198 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V85_RS10805 tenA 2188191..2188880 (-) 690 WP_000396077.1 thiaminase II -
  Q3V85_RS10810 sceD 2189266..2189961 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  Q3V85_RS10815 ssb 2190350..2190745 (-) 396 WP_048665209.1 single-stranded DNA-binding protein Machinery gene
  Q3V85_RS10820 - 2190939..2191379 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V85_RS10825 fabZ 2191438..2191878 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V85_RS10830 murA 2191912..2193177 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V85_RS10835 - 2193288..2193521 (-) 234 WP_000384523.1 DUF1146 family protein -
  Q3V85_RS10840 - 2193653..2193745 (-) 93 WP_001790611.1 hypothetical protein -
  Q3V85_RS10845 - 2194083..2194487 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=860111 Q3V85_RS10815 WP_048665209.1 2190350..2190745(-) (ssb) [Staphylococcus aureus strain SA06-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEIISDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=860111 Q3V85_RS10815 WP_048665209.1 2190350..2190745(-) (ssb) [Staphylococcus aureus strain SA06-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTATCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985