Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Q3V85_RS08225 Genome accession   NZ_CP130544
Coordinates   1698986..1699672 (-) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain SA06-SX     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1693986..1704672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V85_RS08205 rpsT 1694900..1695151 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  Q3V85_RS08210 holA 1695196..1696170 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  Q3V85_RS08215 comEC 1696227..1698428 (-) 2202 WP_001566051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q3V85_RS08220 - 1698433..1698894 (-) 462 WP_000439693.1 ComE operon protein 2 -
  Q3V85_RS08225 comEA 1698986..1699672 (-) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  Q3V85_RS08230 - 1699712..1700428 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  Q3V85_RS08235 rsfS 1700431..1700784 (-) 354 WP_001088022.1 ribosome silencing factor -
  Q3V85_RS08240 yqeK 1700785..1701369 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  Q3V85_RS08245 nadD 1701359..1701928 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  Q3V85_RS08250 yhbY 1701931..1702221 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  Q3V85_RS08255 aroE 1702225..1703031 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  Q3V85_RS08260 yqeH 1703045..1704145 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=860100 Q3V85_RS08225 WP_001792568.1 1698986..1699672(-) (comEA) [Staphylococcus aureus strain SA06-SX]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=860100 Q3V85_RS08225 WP_001792568.1 1698986..1699672(-) (comEA) [Staphylococcus aureus strain SA06-SX]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969