Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   Q3V85_RS05105 Genome accession   NZ_CP130544
Coordinates   1039226..1040212 (+) Length   328 a.a.
NCBI ID   WP_000959287.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA06-SX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1034226..1045212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V85_RS05080 opp4B 1034439..1035401 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  Q3V85_RS05085 opp4C 1035413..1036294 (+) 882 WP_001180262.1 oligopeptide ABC transporter permease -
  Q3V85_RS05090 trpS 1036336..1037325 (-) 990 WP_303262624.1 tryptophan--tRNA ligase -
  Q3V85_RS05095 spxA 1037620..1038015 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  Q3V85_RS05100 mecA 1038386..1039105 (+) 720 WP_001217730.1 adaptor protein MecA -
  Q3V85_RS05105 coiA 1039226..1040212 (+) 987 WP_000959287.1 competence protein CoiA Machinery gene
  Q3V85_RS05110 pepF 1040260..1042068 (+) 1809 WP_000082731.1 oligoendopeptidase F -
  Q3V85_RS05115 yjbH 1042528..1043334 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  Q3V85_RS05120 - 1043357..1043722 (-) 366 WP_000214065.1 truncated hemoglobin YjbI -
  Q3V85_RS05125 - 1043826..1044419 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  Q3V85_RS05130 - 1044605..1044952 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38840.52 Da        Isoelectric Point: 9.7121

>NTDB_id=860085 Q3V85_RS05105 WP_000959287.1 1039226..1040212(+) (coiA) [Staphylococcus aureus strain SA06-SX]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=860085 Q3V85_RS05105 WP_000959287.1 1039226..1040212(+) (coiA) [Staphylococcus aureus strain SA06-SX]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.866

100

0.979