Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q3V85_RS02960 Genome accession   NZ_CP130544
Coordinates   614318..614887 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA06-SX     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 609318..619887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V85_RS02935 cysE 610531..611178 (+) 648 WP_078104161.1 serine O-acetyltransferase -
  Q3V85_RS02940 cysS 611162..612562 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  Q3V85_RS02945 - 612555..612959 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  Q3V85_RS02950 rlmB 612967..613713 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3V85_RS02955 - 613713..614237 (+) 525 WP_000664738.1 NYN domain-containing protein -
  Q3V85_RS02960 sigH 614318..614887 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  Q3V85_RS02965 rpmG 615002..615145 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q3V85_RS02970 secE 615201..615383 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  Q3V85_RS02975 nusG 615396..615944 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q3V85_RS02980 rplK 616125..616547 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q3V85_RS02985 rplA 616755..617447 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q3V85_RS02990 rplJ 617719..618219 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  Q3V85_RS02995 rplL 618262..618630 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q3V85_RS03000 - 618805..619413 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=860080 Q3V85_RS02960 WP_000872873.1 614318..614887(+) (sigH) [Staphylococcus aureus strain SA06-SX]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=860080 Q3V85_RS02960 WP_000872873.1 614318..614887(+) (sigH) [Staphylococcus aureus strain SA06-SX]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984