Detailed information NTG0860075

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: Q3V85_RS00160
• Genome accession: NZ_CP130544
• Coordinates: 38577..40205 (-)
• Length: 542 a.a.
• NCBI ID: WP_224103519.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain SA06-SX
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	40226..41575	38577..40205	flank	21

Gene organization within MGE regions

Location: 38577..41575

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q3V85_RS00160	ccrB	38577..40205 (-)	1629	WP_224103519.1	cassette chromosome recombinase CcrB	Machinery gene
Q3V85_RS00165	ccrA	40226..41575 (-)	1350	WP_193623299.1	cassette chromosome recombinase CcrA	Machinery gene

Sequence

Protein

• Length: 542 a.a.
• Molecular weight: 62187.14 Da
• Isoelectric Point: 9.8286

>NTDB_id=860075 Q3V85_RS00160 WP_224103519.1 38577..40205(-) (ccrB) [Staphylococcus aureus strain SA06-SX]
MQQLKQKRVAIYVRVSTEIQSTEGYSITGQINQIEEYCQFNNFKVVDVYADRGISGKSMNRPALQRMLEDAKNGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVSTSSGKLMLQVLASFAEFERNNIVDNIFMGQTIRAKEGYYQGN
IPYAYDKVPDSKHELMINQHEANVVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYVGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQTLWDKVQARKKQVSEKPQIHGKGTNILTGLISCPQCSASMSASTTVNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILETVKSDKVLKKVVERINQENQVDVSALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNNIANQMNQLKQQQNQEKPSYDTKQISIILRHIFQNIESMDKSQLK
ALYLTVIDRIDIRKDGSHKKQFFVTLKLNNEIIKQLFNNTSLDEVLLSTSSLFLPQTLFLQI

Nucleotide

• Length: 1629 bp

>NTDB_id=860075 Q3V85_RS00160 WP_224103519.1 38577..40205(-) (ccrB) [Staphylococcus aureus strain SA06-SX]
ATGCAACAACTCAAACAAAAACGTGTCGCTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTACTCGAT
AACAGGCCAGATCAATCAGATTGAAGAATACTGTCAATTTAATAACTTCAAAGTGGTAGATGTGTACGCAGATCGTGGTA
TTTCCGGAAAATCTATGAACCGCCCTGCACTACAACGTATGTTAGAAGACGCTAAAAATGGTCACATCGATTGTGTCATG
GTCTACAAAACAAATCGATTAGCACGTAATACATCTGACCTACTCAAAATCGTTGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTCTGTCTGAACGTATGGAAGTTAGCACGAGTAGTGGTAAGCTCATGCTCCAGGTGCTTGCGAGCTTCGCAG
AATTTGAACGCAATAATATTGTAGACAACATCTTTATGGGCCAGACAATTAGAGCGAAAGAAGGGTATTATCAGGGTAAT
ATTCCCTATGCGTATGATAAAGTACCTGACAGTAAACACGAACTTATGATTAATCAACATGAAGCCAATGTTGTAAAGTA
TATCTTCGAATCATATGCCAAAGGGCATGGCTATCGTAAAATTGCCAATGCGCTCAACCATAAAGGCTATGTCACAAAGA
AAGGGAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCTAATCCCTTCTATGTCGGTAAAATTCAATTCGCGAAA
TACAAAGATTGGAACGATAAACGACGTAAAGGGTTAAATGATAAACCCGTAATTGCCGAAGGCAAACATACCCCTATTAT
TAGCCAAACATTATGGGATAAAGTACAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAATCCATGGTAAAGGAACCA
ATATTTTAACTGGATTAATTTCGTGTCCCCAATGTTCTGCTTCAATGTCTGCGAGCACAACAGTTAATACACTTAAAGAT
GGTACTAAAAAACGCATTCGCTACTATTCGTGTAGTAATTTTCGAAATAAAGGGTCAAAGGTATGTTCTGCGAATAGTGT
TAGAGCCGATGTCATTGAAAAATATGTTATGGACCAAATACTTGAAACTGTCAAAAGTGATAAAGTTCTCAAAAAAGTTG
TCGAACGTATTAATCAAGAAAATCAAGTCGATGTATCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATAATATTGCAAACCAAATGAATCAACTCAAGCAGCAACAAAACCAAGAAAAACCAT
CTTACGATACGAAGCAAATATCCATTATCTTACGTCATATATTTCAAAACATAGAATCCATGGATAAATCGCAACTCAAG
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGATGGGAGTCATAAAAAGCAATTCTTTGTCACACTCAA
GCTCAATAATGAGATTATTAAACAACTTTTCAATAATACCTCTCTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

• Ogr/Delta-like zinc finger (Ogr_Delta) (302-356)

• Recombinase (Recombinase) (180-280)

• Resolvase, N terminal domain (Resolvase) (9-155)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	80.812	100	0.808