Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   Q3V85_RS00165 Genome accession   NZ_CP130544
Coordinates   40226..41575 (-) Length   449 a.a.
NCBI ID   WP_193623299.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA06-SX     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 40226..41575 40226..41575 within 0


Gene organization within MGE regions


Location: 40226..41575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V85_RS00165 ccrA 40226..41575 (-) 1350 WP_193623299.1 cassette chromosome recombinase CcrA Machinery gene

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52419.19 Da        Isoelectric Point: 9.9947

>NTDB_id=860076 Q3V85_RS00165 WP_193623299.1 40226..41575(-) (ccrA) [Staphylococcus aureus strain SA06-SX]
MKQAIGYLRQSTTKQQSLAAQKQTIKALAKKHNIPHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKLITTHAPFGYHYY
NGTFTIDTVKAPTIKAVFNYYLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKPNHSLRYYVCPQNMNNARFVCEFKGINAQELETSVLTT
CQDFFQNQQLYSKINQTIQQQLKRQRDIETKTTLNHEQLIEKLANGKIDAETFREQMQSLRQQSKPITSIHTHQIQKALQ
NVIQQRFTLNMLYPYIDEIHITKNKILTGIYFKNEPLNIVNQTAQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=860076 Q3V85_RS00165 WP_193623299.1 40226..41575(-) (ccrA) [Staphylococcus aureus strain SA06-SX]
ATGAAACAAGCAATTGGTTACTTACGACAGAGCACTACAAAGCAACAATCCCTAGCAGCACAGAAACAAACCATCAAGGC
ATTAGCCAAAAAGCATAATATTCCACACATCACCTTTTATAGCGATAAACAATCAGGACGTACTGATAAGCGCAATGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGACAATGTGACGTATTATGTTGCTACCGTCTAAATCGACTTCATCGTAAT
TTGAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGCGTTCATGATGGCTACTTCGA
CATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAAACAAGGTAAACTGATTACAACACATGCACCCTTTGGGTATCACTATTAT
AATGGTACTTTCACAATAGACACAGTAAAAGCACCAACAATAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAAATTCATTAATCGCAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTCAAACGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGCCCCTATTGCCATTCGACACTCACAAACATGACCGTCCGAAAACCAAATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAACGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTCTTAACGACT
TGTCAGGACTTCTTTCAGAACCAACAGCTGTATTCAAAAATTAACCAAACAATTCAACAACAACTCAAAAGACAAAGAGA
CATAGAAACTAAAACTACACTCAACCACGAACAGCTAATAGAAAAATTGGCCAACGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAATGCAATCATTACGTCAGCAATCAAAACCTATAACATCAATCCATACGCATCAAATTCAAAAGGCTTTACAA
AATGTCATTCAACAACGTTTCACATTAAACATGTTGTACCCTTACATTGATGAAATTCATATTACCAAAAATAAAATACT
TACGGGTATCTATTTCAAAAATGAACCCTTAAACATCGTCAATCAAACAGCACAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(170-249)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

92.205

100

0.922
  ccrA Staphylococcus aureus N315

75.278

100

0.753