Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V66_RS11350 Genome accession   NZ_CP130543
Coordinates   2240554..2240949 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA07-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2235554..2245949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V66_RS11325 thiE 2236153..2236794 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  Q3V66_RS11330 thiM 2236796..2237587 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  Q3V66_RS11335 thiD 2237571..2238401 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V66_RS11340 tenA 2238394..2239083 (-) 690 WP_000396068.1 thiaminase II -
  Q3V66_RS11345 sceD 2239470..2240165 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  Q3V66_RS11350 ssb 2240554..2240949 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V66_RS11355 - 2241143..2241583 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V66_RS11360 fabZ 2241640..2242080 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V66_RS11365 murA 2242114..2243379 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V66_RS11370 - 2243490..2243723 (-) 234 WP_000384523.1 DUF1146 family protein -
  Q3V66_RS11375 - 2244376..2244780 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=860068 Q3V66_RS11350 WP_000932694.1 2240554..2240949(-) (ssb) [Staphylococcus aureus strain SA07-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=860068 Q3V66_RS11350 WP_000932694.1 2240554..2240949(-) (ssb) [Staphylococcus aureus strain SA07-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992