Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   WCU03_RS06455 Genome accession   NZ_CP147535
Coordinates   1340429..1341166 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain GN03551     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1335429..1346166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU03_RS06425 (WCU03_06425) yfiL 1335587..1335952 (-) 366 WP_001353010.1 DUF2799 domain-containing protein -
  WCU03_RS06430 (WCU03_06430) aroF 1336162..1337232 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  WCU03_RS06435 (WCU03_06435) tyrA 1337243..1338364 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  WCU03_RS06440 (WCU03_06440) pheA 1338407..1339567 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  WCU03_RS06445 (WCU03_06445) pheL 1339666..1339713 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  WCU03_RS06450 (WCU03_06450) raiA 1339817..1340158 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  WCU03_RS06455 (WCU03_06455) comL 1340429..1341166 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  WCU03_RS06460 (WCU03_06460) rluD 1341301..1342281 (+) 981 WP_000079097.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  WCU03_RS06465 (WCU03_06465) yfiH 1342278..1343009 (+) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  WCU03_RS06470 (WCU03_06470) clpC 1343139..1345712 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=860038 WCU03_RS06455 WP_000197686.1 1340429..1341166(-) (comL) [Escherichia coli strain GN03551]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=860038 WCU03_RS06455 WP_000197686.1 1340429..1341166(-) (comL) [Escherichia coli strain GN03551]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376