Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FLY99_RS19700 Genome accession   NZ_AP024561
Coordinates   4087876..4088505 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NIPH17_0036     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4082876..4093505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLY99_RS19680 ycbZ 4083265..4085025 (-) 1761 WP_000156526.1 Lon protease family protein -
  FLY99_RS19685 matP 4085211..4085663 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  FLY99_RS19690 ompA 4085739..4086791 (-) 1053 WP_001361736.1 porin OmpA -
  FLY99_RS19695 sulA 4087148..4087657 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  FLY99_RS19700 sxy/tfoX 4087876..4088505 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FLY99_RS19705 yccS 4088468..4090630 (-) 2163 WP_000875023.1 YccS family putative transporter -
  FLY99_RS19710 yccF 4090640..4091086 (-) 447 WP_001261235.1 YccF domain-containing protein -
  FLY99_RS19715 helD 4091209..4093263 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=86003 FLY99_RS19700 WP_000839153.1 4087876..4088505(+) (sxy/tfoX) [Escherichia coli strain NIPH17_0036]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=86003 FLY99_RS19700 WP_000839153.1 4087876..4088505(+) (sxy/tfoX) [Escherichia coli strain NIPH17_0036]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment