Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V72_RS10715 Genome accession   NZ_CP130542
Coordinates   2136397..2136792 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA08-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2131397..2141792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V72_RS10690 thiE 2131997..2132638 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  Q3V72_RS10695 thiM 2132640..2133431 (-) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  Q3V72_RS10700 thiD 2133415..2134245 (-) 831 WP_000594967.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V72_RS10705 tenA 2134238..2134927 (-) 690 WP_000396067.1 thiaminase II -
  Q3V72_RS10710 sceD 2135313..2136008 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  Q3V72_RS10715 ssb 2136397..2136792 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V72_RS10720 - 2136986..2137426 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V72_RS10725 fabZ 2137485..2137925 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V72_RS10730 murA 2137959..2139224 (-) 1266 WP_000358010.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V72_RS10735 - 2139335..2139568 (-) 234 WP_000384524.1 DUF1146 family protein -
  Q3V72_RS10740 - 2139700..2139792 (-) 93 WP_031824610.1 hypothetical protein -
  Q3V72_RS10745 - 2140129..2140533 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=860022 Q3V72_RS10715 WP_000932694.1 2136397..2136792(-) (ssb) [Staphylococcus aureus strain SA08-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=860022 Q3V72_RS10715 WP_000932694.1 2136397..2136792(-) (ssb) [Staphylococcus aureus strain SA08-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992