Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Q3V72_RS07570 Genome accession   NZ_CP130542
Coordinates   1587254..1587940 (-) Length   228 a.a.
NCBI ID   WP_234720531.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA08-SX     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1582254..1592940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V72_RS07550 rpsT 1583168..1583419 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  Q3V72_RS07555 holA 1583464..1584438 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  Q3V72_RS07560 comEC 1584495..1586696 (-) 2202 WP_001804765.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q3V72_RS07565 - 1586701..1587162 (-) 462 WP_000439693.1 ComE operon protein 2 -
  Q3V72_RS07570 comEA 1587254..1587940 (-) 687 WP_234720531.1 ComEA family DNA-binding protein Machinery gene
  Q3V72_RS07575 - 1587980..1588696 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  Q3V72_RS07580 rsfS 1588699..1589052 (-) 354 WP_001088020.1 ribosome silencing factor -
  Q3V72_RS07585 yqeK 1589053..1589637 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  Q3V72_RS07590 nadD 1589627..1590196 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  Q3V72_RS07595 yhbY 1590199..1590489 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  Q3V72_RS07600 aroE 1590493..1591299 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  Q3V72_RS07605 yqeH 1591313..1592413 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25916.65 Da        Isoelectric Point: 9.6751

>NTDB_id=860011 Q3V72_RS07570 WP_234720531.1 1587254..1587940(-) (comEA) [Staphylococcus aureus strain SA08-SX]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKVQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=860011 Q3V72_RS07570 WP_234720531.1 1587254..1587940(-) (comEA) [Staphylococcus aureus strain SA08-SX]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGTACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.559

99.561

0.991
  comEA Staphylococcus aureus MW2

96.916

99.561

0.965