Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   WCU35_RS06355 Genome accession   NZ_CP147532
Coordinates   1323163..1324824 (-) Length   553 a.a.
NCBI ID   WP_000880914.1    Uniprot ID   -
Organism   Escherichia coli strain GN03139     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1318163..1329824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU35_RS06325 (WCU35_06325) - 1319286..1320479 (-) 1194 WP_047657977.1 integrase domain-containing protein -
  WCU35_RS06335 (WCU35_06335) smpB 1321241..1321723 (-) 483 WP_000162574.1 SsrA-binding protein SmpB -
  WCU35_RS06340 (WCU35_06340) ratA 1321894..1322331 (+) 438 WP_024175760.1 type II toxin-antitoxin system toxin RatA -
  WCU35_RS06345 (WCU35_06345) yfjF 1322321..1322611 (+) 291 WP_001117840.1 RnfH family protein -
  WCU35_RS06350 (WCU35_06350) bamE 1322673..1323014 (-) 342 WP_001203436.1 outer membrane protein assembly factor BamE -
  WCU35_RS06355 (WCU35_06355) recN 1323163..1324824 (-) 1662 WP_000880914.1 DNA repair protein RecN Machinery gene
  WCU35_RS06360 (WCU35_06360) nadK 1324910..1325788 (-) 879 WP_001059146.1 NAD(+) kinase -
  WCU35_RS06365 (WCU35_06365) grpE 1325911..1326501 (+) 591 WP_012311718.1 nucleotide exchange factor GrpE -
  WCU35_RS06370 (WCU35_06370) - 1326536..1327141 (-) 606 WP_001287889.1 hypothetical protein -
  WCU35_RS06375 (WCU35_06375) yfjD 1327265..1328551 (-) 1287 WP_010723175.1 HlyC/CorC family transporter -
  WCU35_RS06380 (WCU35_06380) ypjD 1328572..1329363 (-) 792 WP_001338897.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61353.29 Da        Isoelectric Point: 5.1819

>NTDB_id=859952 WCU35_RS06355 WP_000880914.1 1323163..1324824(-) (recN) [Escherichia coli strain GN03139]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAARADLCARFSLKDTPAALRWL
EENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALETANALHQQRQHYAEELAQLITDSMHALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMESLDKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=859952 WCU35_RS06355 WP_000880914.1 1323163..1324824(-) (recN) [Escherichia coli strain GN03139]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAAT
AACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACA
TGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGCCCTGCGCTGGCTG
GAAGAAAACCAGCTTGAAGACGGGCATGAATGTTTGCTTCGTCGCGTAATCAGCAGCGATGGTCGCTCCCGTGGTTTTAT
CAACGGTACAGCGGTTCCTCTTTCACAACTGCGCGAACTGGGTCAGTTGCTGATTCAGATCCATGGTCAGCACGCTCATC
AGTTACTCACCAAACCCGAGCACCAAAAATTCCTGCTTGATGGCTATGCCAATGAAACCTCTCTACTCCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGTGACCTCGCGCATCATCAACAGTTAAGTCAGGAACGCGCCGCCCGTGC
AGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAGCAAATCGACGAAGAGT
ACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGACGGTGAAGACGCA
AACCTGCAAAGTCAGCTTTACACGGCTAAACAACTGGTGAGCGAATTGATTGGCATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAAGCTACCATCCAGATTGCTGAAGCCAGCGATGAACTGCGCCACTACTGCGATCGTCTGGACCTCG
ATCCTAACCGACTGTTTGAACTTGAACAGCGCATCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGATCAGGCCGACTCACAAGAAACGCTCGC
GCTGGCGGTAACGAAACATCATCAGCAGGCACTGGAAACCGCGAACGCATTACACCAGCAACGCCAGCACTATGCAGAAG
AACTTGCACAGCTGATCACCGACAGTATGCATGCACTCTCTATGCCGCATGGGCAGTTTACGATTGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGCGCTGATCGTATTGAATTTCGGGTAACCACCAACCCAGGTCAGCCAATGCAGCCTAT
TGCCAAAGTCGCATCCGGTGGTGAATTGTCACGCATCGCATTGGCAATTCAGGTCATCACGGCGCGTAAAATGGAAACCC
CGGCACTGATTTTTGATGAAGTGGATGTAGGGATTAGCGGCCCAACAGCGGCAGTTGTTGGCAAACTGCTGCGTCAACTC
GGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGTGCGATGACAGAAACGCATATGGAGTCGCTGGACAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGC
TTGGTGGCAGTGAAGTCACACGTAACACACTGGCGAATGCGAAAGAACTGCTTGCGGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.975

100

0.38
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365