Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V78_RS11255 Genome accession   NZ_CP130538
Coordinates   2221938..2222333 (-) Length   131 a.a.
NCBI ID   WP_031927386.1    Uniprot ID   A0A6B5T6J9
Organism   Staphylococcus aureus strain SA11-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2216938..2227333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V78_RS11230 thiE 2217537..2218178 (-) 642 WP_000483160.1 thiamine phosphate synthase -
  Q3V78_RS11235 thiM 2218180..2218971 (-) 792 WP_001108488.1 hydroxyethylthiazole kinase -
  Q3V78_RS11240 thiD 2218955..2219785 (-) 831 WP_000594952.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V78_RS11245 tenA 2219778..2220467 (-) 690 WP_000396067.1 thiaminase II -
  Q3V78_RS11250 sceD 2220854..2221549 (-) 696 WP_000751999.1 lytic transglycosylase SceD -
  Q3V78_RS11255 ssb 2221938..2222333 (-) 396 WP_031927386.1 single-stranded DNA-binding protein Machinery gene
  Q3V78_RS11260 - 2222527..2222967 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V78_RS11265 fabZ 2223024..2223464 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V78_RS11270 murA 2223498..2224763 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V78_RS11275 - 2224874..2225107 (-) 234 WP_000384523.1 DUF1146 family protein -
  Q3V78_RS11280 - 2225239..2225316 (-) 78 Protein_2186 hypothetical protein -
  Q3V78_RS11285 - 2225642..2226961 (-) 1320 WP_303261976.1 ISL3-like element IS1181 family transposase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15056.12 Da        Isoelectric Point: 5.6824

>NTDB_id=859895 Q3V78_RS11255 WP_031927386.1 2221938..2222333(-) (ssb) [Staphylococcus aureus strain SA11-SX]
MLNKIIIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=859895 Q3V78_RS11255 WP_031927386.1 2221938..2222333(-) (ssb) [Staphylococcus aureus strain SA11-SX]
ATGCTAAATAAAATCATAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B5T6J9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985