Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   Q3V78_RS08185 Genome accession   NZ_CP130538
Coordinates   1656194..1656640 (-) Length   148 a.a.
NCBI ID   WP_072357807.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA11-SX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1651194..1661640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V78_RS08155 gcvPA 1652120..1653466 (-) 1347 WP_226452143.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  Q3V78_RS08160 gcvT 1653486..1654577 (-) 1092 WP_226452142.1 glycine cleavage system aminomethyltransferase GcvT -
  Q3V78_RS08165 - 1654736..1655260 (-) 525 WP_001015120.1 shikimate kinase -
  Q3V78_RS08170 - 1655250..1655396 (-) 147 WP_001789879.1 hypothetical protein -
  Q3V78_RS08175 comGF 1655493..1655990 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q3V78_RS08180 comGE 1655908..1656207 (-) 300 WP_000844415.1 hypothetical protein Machinery gene
  Q3V78_RS08185 comGD 1656194..1656640 (-) 447 WP_072357807.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q3V78_RS08190 comGC 1656618..1656929 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  Q3V78_RS08195 comGB 1656943..1658013 (-) 1071 WP_000776413.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q3V78_RS08200 comGA 1657985..1658959 (-) 975 WP_000697222.1 competence type IV pilus ATPase ComGA Machinery gene
  Q3V78_RS08205 - 1659011..1659634 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  Q3V78_RS08210 - 1659631..1659960 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  Q3V78_RS08215 - 1659960..1660946 (-) 987 WP_000161315.1 ROK family glucokinase -
  Q3V78_RS08220 - 1660943..1661146 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=859877 Q3V78_RS08185 WP_072357807.1 1656194..1656640(-) (comGD) [Staphylococcus aureus strain SA11-SX]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYFKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=859877 Q3V78_RS08185 WP_072357807.1 1656194..1656640(-) (comGD) [Staphylococcus aureus strain SA11-SX]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATTTTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986