Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q3V78_RS06430 Genome accession   NZ_CP130538
Coordinates   1282008..1282880 (+) Length   290 a.a.
NCBI ID   WP_226452178.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA11-SX     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1277008..1287880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V78_RS06400 - 1277153..1277920 (+) 768 WP_226452179.1 ribonuclease HII -
  Q3V78_RS06405 sucC 1278029..1279195 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  Q3V78_RS06410 sucD 1279217..1280125 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  Q3V78_RS06415 - 1280352..1280408 (+) 57 Protein_1258 YSIRK-type signal peptide-containing protein -
  Q3V78_RS06420 - 1280412..1280564 (+) 153 Protein_1259 cell wall hydrolase -
  Q3V78_RS06425 fmhC 1280592..1281836 (+) 1245 WP_000672857.1 FemA/FemB family glycyltransferase FmhC -
  Q3V78_RS06430 dprA 1282008..1282880 (+) 873 WP_226452178.1 DNA-processing protein DprA Machinery gene
  Q3V78_RS06435 topA 1283054..1285129 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  Q3V78_RS06440 trmFO 1285285..1286592 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33547.02 Da        Isoelectric Point: 9.6076

>NTDB_id=859870 Q3V78_RS06430 WP_226452178.1 1282008..1282880(+) (dprA) [Staphylococcus aureus strain SA11-SX]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYIQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=859870 Q3V78_RS06430 WP_226452178.1 1282008..1282880(+) (dprA) [Staphylococcus aureus strain SA11-SX]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATATCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.621

100

0.986
  dprA Staphylococcus aureus N315

98.276

100

0.983