Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V88_RS10800 Genome accession   NZ_CP130537
Coordinates   2150045..2150440 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA12-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2145045..2155440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V88_RS10775 thiE 2145645..2146286 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  Q3V88_RS10780 thiM 2146288..2147079 (-) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  Q3V88_RS10785 thiD 2147063..2147893 (-) 831 WP_000594967.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V88_RS10790 tenA 2147886..2148575 (-) 690 WP_000396067.1 thiaminase II -
  Q3V88_RS10795 sceD 2148961..2149656 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  Q3V88_RS10800 ssb 2150045..2150440 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V88_RS10805 - 2150634..2151074 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V88_RS10810 fabZ 2151132..2151572 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V88_RS10815 murA 2151606..2152871 (-) 1266 WP_000358010.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V88_RS10820 - 2152982..2153215 (-) 234 WP_000384524.1 DUF1146 family protein -
  Q3V88_RS10825 - 2153347..2153439 (-) 93 WP_031824610.1 hypothetical protein -
  Q3V88_RS10830 - 2153768..2154172 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=859854 Q3V88_RS10800 WP_000932694.1 2150045..2150440(-) (ssb) [Staphylococcus aureus strain SA12-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=859854 Q3V88_RS10800 WP_000932694.1 2150045..2150440(-) (ssb) [Staphylococcus aureus strain SA12-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992