Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Q3V88_RS07655 Genome accession   NZ_CP130537
Coordinates   1600639..1601325 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA12-SX     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1595639..1606325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V88_RS07635 rpsT 1596553..1596804 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  Q3V88_RS07640 holA 1596849..1597823 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  Q3V88_RS07645 comEC 1597880..1600081 (-) 2202 WP_001804765.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q3V88_RS07650 - 1600086..1600547 (-) 462 WP_000439693.1 ComE operon protein 2 -
  Q3V88_RS07655 comEA 1600639..1601325 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  Q3V88_RS07660 - 1601365..1602081 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  Q3V88_RS07665 rsfS 1602084..1602437 (-) 354 WP_001088020.1 ribosome silencing factor -
  Q3V88_RS07670 yqeK 1602438..1603022 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  Q3V88_RS07675 nadD 1603012..1603581 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  Q3V88_RS07680 yhbY 1603584..1603874 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  Q3V88_RS07685 aroE 1603878..1604684 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  Q3V88_RS07690 yqeH 1604698..1605798 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=859843 Q3V88_RS07655 WP_001788928.1 1600639..1601325(-) (comEA) [Staphylococcus aureus strain SA12-SX]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=859843 Q3V88_RS07655 WP_001788928.1 1600639..1601325(-) (comEA) [Staphylococcus aureus strain SA12-SX]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969