Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   Q3V88_RS04605 Genome accession   NZ_CP130537
Coordinates   948837..949823 (+) Length   328 a.a.
NCBI ID   WP_000959284.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA12-SX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 943837..954823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V88_RS04580 opp4B 944049..945011 (+) 963 WP_000239819.1 oligopeptide ABC transporter permease -
  Q3V88_RS04585 opp4C 945023..945904 (+) 882 WP_031918645.1 oligopeptide ABC transporter permease -
  Q3V88_RS04590 trpS 945946..946935 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -
  Q3V88_RS04595 spxA 947231..947626 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  Q3V88_RS04600 mecA 947997..948716 (+) 720 WP_001217728.1 adaptor protein MecA -
  Q3V88_RS04605 coiA 948837..949823 (+) 987 WP_000959284.1 competence protein CoiA Machinery gene
  Q3V88_RS04610 pepF 949871..951679 (+) 1809 WP_000082730.1 oligoendopeptidase F -
  Q3V88_RS04615 yjbH 952140..952946 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  Q3V88_RS04620 - 952969..953334 (-) 366 WP_000214068.1 truncated hemoglobin YjbI -
  Q3V88_RS04625 - 953438..954031 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  Q3V88_RS04630 - 954217..954564 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38810.39 Da        Isoelectric Point: 9.5881

>NTDB_id=859828 Q3V88_RS04605 WP_000959284.1 948837..949823(+) (coiA) [Staphylococcus aureus strain SA12-SX]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=859828 Q3V88_RS04605 WP_000959284.1 948837..949823(+) (coiA) [Staphylococcus aureus strain SA12-SX]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTATTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTACACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982