Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q3V88_RS02520 Genome accession   NZ_CP130537
Coordinates   531585..532154 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA12-SX     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 526585..537154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V88_RS02495 cysE 527798..528445 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  Q3V88_RS02500 cysS 528429..529829 (+) 1401 WP_000631974.1 cysteine--tRNA ligase -
  Q3V88_RS02505 - 529822..530226 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  Q3V88_RS02510 rlmB 530234..530980 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3V88_RS02515 - 530980..531504 (+) 525 WP_000664738.1 NYN domain-containing protein -
  Q3V88_RS02520 sigH 531585..532154 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  Q3V88_RS02525 rpmG 532269..532412 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q3V88_RS02530 secE 532468..532650 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q3V88_RS02535 nusG 532663..533211 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q3V88_RS02540 rplK 533392..533814 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q3V88_RS02545 rplA 534022..534714 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q3V88_RS02550 rplJ 534986..535486 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  Q3V88_RS02555 rplL 535529..535897 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q3V88_RS02560 - 536072..536680 (+) 609 WP_031918733.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=859823 Q3V88_RS02520 WP_000872873.1 531585..532154(+) (sigH) [Staphylococcus aureus strain SA12-SX]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=859823 Q3V88_RS02520 WP_000872873.1 531585..532154(+) (sigH) [Staphylococcus aureus strain SA12-SX]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984