Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Q3V61_RS07660 Genome accession   NZ_CP130536
Coordinates   1613997..1614683 (-) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA13-SX     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1608997..1619683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V61_RS07640 rpsT 1609911..1610162 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  Q3V61_RS07645 holA 1610207..1611181 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  Q3V61_RS07650 comEC 1611238..1613439 (-) 2202 WP_000967504.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q3V61_RS07655 - 1613444..1613905 (-) 462 WP_000439693.1 ComE operon protein 2 -
  Q3V61_RS07660 comEA 1613997..1614683 (-) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  Q3V61_RS07665 - 1614723..1615439 (-) 717 WP_000942456.1 class I SAM-dependent methyltransferase -
  Q3V61_RS07670 rsfS 1615442..1615795 (-) 354 WP_001088020.1 ribosome silencing factor -
  Q3V61_RS07675 yqeK 1615796..1616380 (-) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  Q3V61_RS07680 nadD 1616370..1616939 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  Q3V61_RS07685 yhbY 1616942..1617232 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  Q3V61_RS07690 aroE 1617236..1618042 (-) 807 WP_000666767.1 shikimate dehydrogenase -
  Q3V61_RS07695 yqeH 1618056..1619156 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=859801 Q3V61_RS07660 WP_078055782.1 1613997..1614683(-) (comEA) [Staphylococcus aureus strain SA13-SX]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=859801 Q3V61_RS07660 WP_078055782.1 1613997..1614683(-) (comEA) [Staphylococcus aureus strain SA13-SX]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982