Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V67_RS10290 Genome accession   NZ_CP130533
Coordinates   2086897..2087292 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA15-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2081897..2092292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V67_RS10265 thiE 2082303..2082944 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  Q3V67_RS10270 thiM 2082946..2083737 (-) 792 WP_001108480.1 hydroxyethylthiazole kinase -
  Q3V67_RS10275 thiD 2083721..2084551 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V67_RS10280 tenA 2084544..2085233 (-) 690 WP_000396079.1 thiaminase II -
  Q3V67_RS10285 sceD 2085813..2086508 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  Q3V67_RS10290 ssb 2086897..2087292 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V67_RS10295 - 2087486..2087926 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V67_RS10300 fabZ 2087985..2088425 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V67_RS10305 murA 2088459..2089724 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V67_RS10310 - 2089835..2090068 (-) 234 WP_049307434.1 DUF1146 family protein -
  Q3V67_RS10315 - 2090200..2090292 (-) 93 WP_031835036.1 hypothetical protein -
  Q3V67_RS10320 - 2090629..2091033 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=859724 Q3V67_RS10290 WP_000932694.1 2086897..2087292(-) (ssb) [Staphylococcus aureus strain SA15-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=859724 Q3V67_RS10290 WP_000932694.1 2086897..2087292(-) (ssb) [Staphylococcus aureus strain SA15-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992