Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Q3V67_RS07850 Genome accession   NZ_CP130533
Coordinates   1625072..1625758 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA15-SX     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1620072..1630758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V67_RS07830 rpsT 1620986..1621237 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  Q3V67_RS07835 holA 1621282..1622256 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  Q3V67_RS07840 comEC 1622313..1624514 (-) 2202 WP_303262316.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q3V67_RS07845 - 1624519..1624980 (-) 462 WP_000439693.1 ComE operon protein 2 -
  Q3V67_RS07850 comEA 1625072..1625758 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  Q3V67_RS07855 - 1625798..1626514 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  Q3V67_RS07860 rsfS 1626517..1626870 (-) 354 WP_001088020.1 ribosome silencing factor -
  Q3V67_RS07865 yqeK 1626871..1627455 (-) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  Q3V67_RS07870 nadD 1627445..1628014 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  Q3V67_RS07875 yhbY 1628017..1628307 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  Q3V67_RS07880 aroE 1628311..1629117 (-) 807 WP_000666744.1 shikimate dehydrogenase -
  Q3V67_RS07885 yqeH 1629131..1630231 (-) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=859713 Q3V67_RS07850 WP_001788928.1 1625072..1625758(-) (comEA) [Staphylococcus aureus strain SA15-SX]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=859713 Q3V67_RS07850 WP_001788928.1 1625072..1625758(-) (comEA) [Staphylococcus aureus strain SA15-SX]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969