Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   Q3V67_RS04775 Genome accession   NZ_CP130533
Coordinates   964959..965945 (+) Length   328 a.a.
NCBI ID   WP_000959289.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA15-SX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 959959..970945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V67_RS04755 trpS 960149..961138 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  Q3V67_RS04760 spxA 961433..961828 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  Q3V67_RS04765 - 961892..963538 (-) 1647 WP_000277718.1 IS1182 family transposase -
  Q3V67_RS04770 mecA 964119..964838 (+) 720 WP_001217728.1 adaptor protein MecA -
  Q3V67_RS04775 coiA 964959..965945 (+) 987 WP_000959289.1 competence protein CoiA Machinery gene
  Q3V67_RS04780 pepF 965993..967801 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  Q3V67_RS04785 yjbH 968261..969067 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  Q3V67_RS04790 - 969090..969455 (-) 366 WP_000214069.1 truncated hemoglobin YjbI -
  Q3V67_RS04795 - 969559..970152 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  Q3V67_RS04800 - 970338..970685 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38776.37 Da        Isoelectric Point: 9.5881

>NTDB_id=859698 Q3V67_RS04775 WP_000959289.1 964959..965945(+) (coiA) [Staphylococcus aureus strain SA15-SX]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAIYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=859698 Q3V67_RS04775 WP_000959289.1 964959..965945(+) (coiA) [Staphylococcus aureus strain SA15-SX]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATATATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979