Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q3V67_RS02445 Genome accession   NZ_CP130533
Coordinates   517282..517851 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA15-SX     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 512282..522851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V67_RS02420 cysE 513495..514142 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  Q3V67_RS02425 cysS 514126..515526 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  Q3V67_RS02430 - 515519..515923 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  Q3V67_RS02435 rlmB 515931..516677 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3V67_RS02440 - 516677..517201 (+) 525 WP_000664738.1 NYN domain-containing protein -
  Q3V67_RS02445 sigH 517282..517851 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  Q3V67_RS02450 rpmG 517966..518109 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q3V67_RS02455 secE 518165..518347 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q3V67_RS02460 nusG 518360..518908 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q3V67_RS02465 rplK 519089..519511 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q3V67_RS02470 rplA 519719..520411 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q3V67_RS02475 rplJ 520683..521183 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  Q3V67_RS02480 rplL 521226..521594 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q3V67_RS02485 - 521769..522377 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=859692 Q3V67_RS02445 WP_000872873.1 517282..517851(+) (sigH) [Staphylococcus aureus strain SA15-SX]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=859692 Q3V67_RS02445 WP_000872873.1 517282..517851(+) (sigH) [Staphylococcus aureus strain SA15-SX]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984