Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V75_RS10615 Genome accession   NZ_CP130529
Coordinates   2143387..2143782 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA17-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2138387..2148782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V75_RS10590 thiE 2138986..2139627 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  Q3V75_RS10595 thiM 2139629..2140420 (-) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  Q3V75_RS10600 thiD 2140404..2141234 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V75_RS10605 tenA 2141227..2141916 (-) 690 WP_000396069.1 thiaminase II -
  Q3V75_RS10610 sceD 2142303..2142998 (-) 696 WP_000752002.1 lytic transglycosylase SceD -
  Q3V75_RS10615 ssb 2143387..2143782 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V75_RS10620 - 2143976..2144416 (+) 441 WP_000846750.1 YwpF-like family protein -
  Q3V75_RS10625 fabZ 2144474..2144914 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V75_RS10630 murA 2144948..2146213 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V75_RS10635 - 2146324..2146557 (-) 234 WP_000384523.1 DUF1146 family protein -
  Q3V75_RS10640 - 2146689..2146781 (-) 93 WP_031789435.1 hypothetical protein -
  Q3V75_RS10645 - 2147233..2147637 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=859641 Q3V75_RS10615 WP_000932694.1 2143387..2143782(-) (ssb) [Staphylococcus aureus strain SA17-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=859641 Q3V75_RS10615 WP_000932694.1 2143387..2143782(-) (ssb) [Staphylococcus aureus strain SA17-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992