Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   WBM82_RS21620 Genome accession   NZ_CP147494
Coordinates   4096873..4097667 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain YT1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4091873..4102667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS21595 (WBM82_21655) - 4092986..4093669 (-) 684 WP_024573086.1 response regulator transcription factor -
  WBM82_RS21600 (WBM82_21660) - 4093881..4094780 (+) 900 WP_003226945.1 PepSY domain-containing protein -
  WBM82_RS21605 (WBM82_21665) - 4094942..4095442 (+) 501 WP_003226943.1 PepSY domain-containing protein -
  WBM82_RS21610 (WBM82_21670) - 4095439..4095568 (-) 130 Protein_4106 hypothetical protein -
  WBM82_RS21615 (WBM82_21675) htrA 4095589..4096791 (-) 1203 WP_003226941.1 serine protease HtrC Regulator
  WBM82_RS21620 (WBM82_21680) vicX 4096873..4097667 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  WBM82_RS21625 (WBM82_21685) walI 4097689..4098531 (-) 843 WP_003226937.1 WalRK two-component regulatory system regulator WalI -
  WBM82_RS21630 (WBM82_21690) walH 4098518..4099885 (-) 1368 WP_248719398.1 WalRK two-component regulatory system regulator WalH -
  WBM82_RS21635 (WBM82_21695) walK 4099875..4101710 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  WBM82_RS21640 (WBM82_21700) walR 4101718..4102425 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=859599 WBM82_RS21620 WP_003226939.1 4096873..4097667(-) (vicX) [Bacillus subtilis strain YT1]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=859599 WBM82_RS21620 WP_003226939.1 4096873..4097667(-) (vicX) [Bacillus subtilis strain YT1]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGGAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATTTATGCG
AACGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTGAAGTCGTTTGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCCGAACCGATGTTTTATGTGTTCC
ATTATAACGGCCGAAAGCTCGCATTAATGACAGATACGGGATATGTCAGCGACCGAATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCCGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACTGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53