Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   WBM82_RS15295 Genome accession   NZ_CP147494
Coordinates   2854645..2856417 (-) Length   590 a.a.
NCBI ID   WP_160221721.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2849645..2861417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS15275 (WBM82_15325) sdhA 2849864..2851624 (-) 1761 WP_003229567.1 succinate dehydrogenase flavoprotein subunit -
  WBM82_RS15280 (WBM82_15330) sdhC 2851658..2852266 (-) 609 WP_003222512.1 succinate dehydrogenase cytochrome B558 -
  WBM82_RS15285 (WBM82_15335) yslB 2852559..2853005 (+) 447 WP_003222508.1 YslB family protein -
  WBM82_RS15290 (WBM82_15340) lysCA 2853049..2854275 (-) 1227 WP_128422337.1 aspartate kinase -
  WBM82_RS15295 (WBM82_15345) uvrC 2854645..2856417 (-) 1773 WP_160221721.1 excinuclease ABC subunit UvrC Machinery gene
  WBM82_RS15300 (WBM82_15350) trxA 2856553..2856867 (-) 315 WP_003222500.1 thioredoxin -
  WBM82_RS15305 (WBM82_15355) abfB 2857190..2858677 (-) 1488 WP_217024312.1 alpha-L-arabinofuranosidase AbfB -
  WBM82_RS15310 (WBM82_15360) etfA 2858894..2859871 (-) 978 WP_128474158.1 electron transfer flavoprotein subunit alpha -
  WBM82_RS15315 (WBM82_15365) etfB 2859907..2860680 (-) 774 WP_004398765.1 electron transfer flavoprotein subunit beta -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68603.47 Da        Isoelectric Point: 9.5317

>NTDB_id=859564 WBM82_RS15295 WP_160221721.1 2854645..2856417(-) (uvrC) [Bacillus subtilis strain YT1]
MNKQLKEKLALLPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKHDPKYNVMLKDDKTYPFIKLTHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNRELVESITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQMAHIESTMEKQKMTMN
DLVDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDQSMIEQL
LETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERDEERSIGAVQKLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPYKKEYRKYKIKTVRGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVIENELGLDIPIAGLA
KDEKHRTSNLLIGEPLEVVYLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLEDIKKAGVPTAAAQLLYDKLQK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=859564 WBM82_RS15295 WP_160221721.1 2854645..2856417(-) (uvrC) [Bacillus subtilis strain YT1]
ATGAACAAACAACTGAAAGAAAAACTCGCCCTCCTTCCTGATCAACCGGGTTGTTATCTCATGAAGGACCGGCAGCAGAC
TGTGATCTACGTAGGGAAAGCAAAAGTGCTGAAAAACAGAGTGCGCTCCTACTTCACCGGTTCTCACGACGCGAAAACCC
AAAGGCTTGTGACGGAAATCGAGGATTTTGAATATATCGTGACGTCCTCCAATCTTGAAGCGCTTATTTTAGAAATGAAT
CTGATCAAAAAGCATGATCCGAAATACAACGTCATGCTCAAAGACGACAAAACCTATCCTTTCATAAAACTCACCCATGA
ACGCCACCCAAGGCTGATTGTCACCCGCAATGTCAAAAAAGACAAAGGGCGCTATTTCGGGCCGTATCCGAATGTACAGG
CAGCAAGGGAAACAAAAAAACTGCTCGACCGTCTGTATCCTCTCAGAAAATGCTCCAAGCTCCCGGACAGAGTGTGCCTT
TACTATCATCTGGGCCAATGCCTCGCTCCGTGTGTAAAGGATATTTCCGAAGAGACGAACAGAGAGCTGGTTGAAAGCAT
TACACGTTTCTTAAGGGGCGGCTATAATGAGGTCAAAAAAGAGCTTGAAGAGAAAATGCATGAAGCTGCTGAGAATCTTG
AGTTTGAACGAGCAAAAGAGCTTCGTGACCAAATGGCCCATATTGAATCAACGATGGAAAAACAAAAAATGACGATGAAC
GATCTAGTCGACCGTGATGTATTCGCGTACGCGTACGATAAAGGCTGGATGTGCGTGCAGGTCTTTTTCATCCGCCAAGG
AAAGCTCATTGAACGCGATGTCAGCATGTTCCCGCTTTATCAGGAAGCAGATGAAGAGTTCCTCACGTTCATCGGGCAGT
TCTATTCAAAAAACAACCACTTCCTTCCGAAGGAGATTTTAGTTCCGGACAGCGTAGATCAATCCATGATCGAGCAGCTG
CTGGAAACAAACGTTCACCAGCCGAAGAAAGGCCCGAAAAAAGAACTGCTCATGCTTGCCCATAAAAATGCGAAAATCGC
ATTGAAAGAAAAATTCTCTTTAATCGAACGGGACGAGGAGCGTTCAATCGGGGCAGTGCAGAAACTAGGTGAGGCATTAA
ATATTTATACGCCGCACAGAATTGAAGCGTTTGACAACTCAAACATACAGGGGACAAACCCGGTTTCCGCGATGATTGTG
TTTATCGATGGCAAACCATACAAAAAGGAATACCGCAAATATAAAATCAAAACTGTTAGAGGGCCGGATGATTACGGTTC
TATGAGAGAGGTTGTCAGAAGACGCTATACGAGAGTGCTTCGTGAGAATCTGCCGCTGCCCGATCTGATTATCATTGACG
GAGGAAAAGGGCAGATCAACGCAGCAAGGGATGTCATTGAAAATGAACTCGGTTTGGATATCCCGATCGCCGGTTTAGCG
AAAGATGAAAAACACAGAACCTCAAATTTACTGATCGGTGAGCCGCTGGAGGTAGTGTATCTGGAACGAAACAGCCAGGA
ATTTTACCTCCTGCAGCGCATTCAAGACGAGGTGCACCGTTTTGCAATCAGTTTTCACAGGCAAATCCGCGGAAAAAGCG
CGTTTCAATCCGTTTTGGACGACATCCCGGGTATCGGAGAGAAAAGAAAGAAAATGCTGTTAAAGCATTTCGGTTCCGTT
AAAAAAATGAAGGAAGCAAGCCTTGAGGACATCAAAAAAGCCGGTGTTCCCACAGCGGCGGCTCAGCTCCTTTACGACAA
ATTGCAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

UvrB/uvrC motif (UVR)

(197-229)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.014

99.661

0.588
  uvrC Streptococcus pneumoniae R6

58.673

99.661

0.585
  uvrC Streptococcus pneumoniae D39

58.673

99.661

0.585