Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q3V57_RS02565 Genome accession   NZ_CP130525
Coordinates   557545..558114 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA20-SX     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 552545..563114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V57_RS02540 cysE 553758..554405 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  Q3V57_RS02545 cysS 554389..555789 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  Q3V57_RS02550 - 555782..556186 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  Q3V57_RS02555 rlmB 556194..556940 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3V57_RS02560 - 556940..557464 (+) 525 WP_000664732.1 NYN domain-containing protein -
  Q3V57_RS02565 sigH 557545..558114 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  Q3V57_RS02570 rpmG 558229..558372 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q3V57_RS02575 secE 558428..558610 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q3V57_RS02580 nusG 558623..559171 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q3V57_RS02585 rplK 559352..559774 (+) 423 WP_217654611.1 50S ribosomal protein L11 -
  Q3V57_RS02590 rplA 559982..560674 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q3V57_RS02595 rplJ 560946..561446 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  Q3V57_RS02600 rplL 561489..561857 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q3V57_RS02605 - 562032..562640 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=859482 Q3V57_RS02565 WP_000872873.1 557545..558114(+) (sigH) [Staphylococcus aureus strain SA20-SX]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=859482 Q3V57_RS02565 WP_000872873.1 557545..558114(+) (sigH) [Staphylococcus aureus strain SA20-SX]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984