Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V73_RS10625 Genome accession   NZ_CP130523
Coordinates   2145457..2145852 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA22-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2140457..2150852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V73_RS10600 thiE 2141055..2141696 (-) 642 WP_000483147.1 thiamine phosphate synthase -
  Q3V73_RS10605 thiM 2141698..2142489 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  Q3V73_RS10610 thiD 2142473..2143303 (-) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V73_RS10615 tenA 2143296..2143985 (-) 690 WP_000396067.1 thiaminase II -
  Q3V73_RS10620 sceD 2144373..2145068 (-) 696 WP_000751997.1 lytic transglycosylase SceD -
  Q3V73_RS10625 ssb 2145457..2145852 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V73_RS10630 istB 2145995..2146756 (-) 762 WP_189912517.1 IS21-like element helper ATPase IstB -
  Q3V73_RS10635 istA 2146749..2148041 (-) 1293 WP_000777467.1 IS21 family transposase -
  Q3V73_RS10640 - 2148252..2148692 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V73_RS10645 fabZ 2148749..2149189 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V73_RS10650 murA 2149223..2150488 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V73_RS10655 - 2150599..2150832 (-) 234 WP_000384520.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=859427 Q3V73_RS10625 WP_000932694.1 2145457..2145852(-) (ssb) [Staphylococcus aureus strain SA22-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=859427 Q3V73_RS10625 WP_000932694.1 2145457..2145852(-) (ssb) [Staphylococcus aureus strain SA22-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992