Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Q3V73_RS07680 Genome accession   NZ_CP130523
Coordinates   1619141..1619827 (-) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA22-SX     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1614141..1624827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V73_RS07660 rpsT 1615055..1615306 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  Q3V73_RS07665 holA 1615351..1616325 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  Q3V73_RS07670 comEC 1616382..1618583 (-) 2202 WP_000967504.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q3V73_RS07675 - 1618588..1619049 (-) 462 WP_000439693.1 ComE operon protein 2 -
  Q3V73_RS07680 comEA 1619141..1619827 (-) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  Q3V73_RS07685 - 1619867..1620583 (-) 717 WP_000942456.1 class I SAM-dependent methyltransferase -
  Q3V73_RS07690 rsfS 1620586..1620939 (-) 354 WP_001088020.1 ribosome silencing factor -
  Q3V73_RS07695 yqeK 1620940..1621524 (-) 585 WP_303261878.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  Q3V73_RS07700 nadD 1621514..1622083 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  Q3V73_RS07705 yhbY 1622086..1622376 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  Q3V73_RS07710 aroE 1622380..1623186 (-) 807 WP_000666767.1 shikimate dehydrogenase -
  Q3V73_RS07715 yqeH 1623200..1624300 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=859414 Q3V73_RS07680 WP_078055782.1 1619141..1619827(-) (comEA) [Staphylococcus aureus strain SA22-SX]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=859414 Q3V73_RS07680 WP_078055782.1 1619141..1619827(-) (comEA) [Staphylococcus aureus strain SA22-SX]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982