Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Q3V62_RS07705 Genome accession   NZ_CP130522
Coordinates   1619082..1619768 (-) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA23-SX     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1614082..1624768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V62_RS07685 rpsT 1614996..1615247 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  Q3V62_RS07690 holA 1615292..1616266 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  Q3V62_RS07695 comEC 1616323..1618524 (-) 2202 WP_303062322.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q3V62_RS07700 - 1618529..1618990 (-) 462 WP_000439693.1 ComE operon protein 2 -
  Q3V62_RS07705 comEA 1619082..1619768 (-) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  Q3V62_RS07710 - 1619808..1620524 (-) 717 WP_000942456.1 class I SAM-dependent methyltransferase -
  Q3V62_RS07715 rsfS 1620527..1620880 (-) 354 WP_001088020.1 ribosome silencing factor -
  Q3V62_RS07720 yqeK 1620881..1621465 (-) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  Q3V62_RS07725 nadD 1621455..1622024 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  Q3V62_RS07730 yhbY 1622027..1622317 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  Q3V62_RS07735 aroE 1622321..1623127 (-) 807 WP_000666767.1 shikimate dehydrogenase -
  Q3V62_RS07740 yqeH 1623141..1624241 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=859370 Q3V62_RS07705 WP_078055782.1 1619082..1619768(-) (comEA) [Staphylococcus aureus strain SA23-SX]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=859370 Q3V62_RS07705 WP_078055782.1 1619082..1619768(-) (comEA) [Staphylococcus aureus strain SA23-SX]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982