Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q3V64_RS11015 Genome accession   NZ_CP130517
Coordinates   2230828..2231397 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA26-SX     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2225828..2236397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V64_RS10975 - 2226302..2226910 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  Q3V64_RS10980 rplL 2227085..2227453 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q3V64_RS10985 rplJ 2227496..2227996 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  Q3V64_RS10990 rplA 2228268..2228960 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q3V64_RS10995 rplK 2229168..2229590 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q3V64_RS11000 nusG 2229771..2230319 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q3V64_RS11005 secE 2230332..2230514 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q3V64_RS11010 rpmG 2230570..2230713 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q3V64_RS11015 sigH 2230828..2231397 (-) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  Q3V64_RS11020 - 2231478..2232002 (-) 525 WP_117346115.1 NYN domain-containing protein -
  Q3V64_RS11025 rlmB 2232002..2232748 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3V64_RS11030 - 2232756..2233160 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  Q3V64_RS11035 cysS 2233153..2234553 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  Q3V64_RS11040 cysE 2234537..2235184 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=859250 Q3V64_RS11015 WP_000872876.1 2230828..2231397(-) (sigH) [Staphylococcus aureus strain SA26-SX]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=859250 Q3V64_RS11015 WP_000872876.1 2230828..2231397(-) (sigH) [Staphylococcus aureus strain SA26-SX]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984