Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   Q3V64_RS09080 Genome accession   NZ_CP130517
Coordinates   1836380..1837366 (-) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA26-SX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1831380..1842366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V64_RS09055 - 1831640..1831987 (-) 348 WP_031589545.1 hypothetical protein -
  Q3V64_RS09060 - 1832173..1832766 (+) 594 WP_000224611.1 CYTH domain-containing protein -
  Q3V64_RS09065 - 1832870..1833235 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  Q3V64_RS09070 yjbH 1833258..1834064 (+) 807 WP_303074119.1 protease adaptor protein YjbH -
  Q3V64_RS09075 pepF 1834524..1836332 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  Q3V64_RS09080 coiA 1836380..1837366 (-) 987 WP_000959292.1 competence protein CoiA Machinery gene
  Q3V64_RS09085 mecA 1837487..1838206 (-) 720 WP_001217723.1 adaptor protein MecA -
  Q3V64_RS09090 spxA 1838577..1838972 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  Q3V64_RS09095 trpS 1839267..1840256 (+) 990 WP_031589556.1 tryptophan--tRNA ligase -
  Q3V64_RS09100 opp4C 1840298..1841179 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  Q3V64_RS09105 opp4B 1841191..1842153 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=859245 Q3V64_RS09080 WP_000959292.1 1836380..1837366(-) (coiA) [Staphylococcus aureus strain SA26-SX]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=859245 Q3V64_RS09080 WP_000959292.1 1836380..1837366(-) (coiA) [Staphylococcus aureus strain SA26-SX]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976