Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   Q3V64_RS06160 Genome accession   NZ_CP130517
Coordinates   1218915..1219889 (+) Length   324 a.a.
NCBI ID   WP_031587486.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA26-SX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1213915..1224889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V64_RS06125 rpmG 1214375..1214524 (+) 150 WP_001265709.1 50S ribosomal protein L33 -
  Q3V64_RS06130 - 1214733..1215272 (+) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  Q3V64_RS06135 - 1215284..1216747 (+) 1464 WP_001017858.1 rhomboid family intramembrane serine protease -
  Q3V64_RS06140 - 1216728..1216931 (+) 204 WP_000087561.1 YqgQ family protein -
  Q3V64_RS06145 - 1216928..1217914 (+) 987 WP_000161314.1 ROK family glucokinase -
  Q3V64_RS06150 - 1217914..1218243 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  Q3V64_RS06155 - 1218240..1218863 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  Q3V64_RS06160 comGA 1218915..1219889 (+) 975 WP_031587486.1 competence type IV pilus ATPase ComGA Machinery gene
  Q3V64_RS06165 comGB 1219861..1220931 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q3V64_RS06170 comGC 1220945..1221256 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  Q3V64_RS06175 comGD 1221234..1221680 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q3V64_RS06180 comGE 1221667..1221966 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  Q3V64_RS06185 comGF 1221884..1222381 (+) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q3V64_RS06190 - 1222479..1223650 (-) 1172 Protein_1184 IS256 family transposase -
  Q3V64_RS06195 - 1223809..1223955 (+) 147 WP_001792109.1 hypothetical protein -
  Q3V64_RS06200 - 1223945..1224469 (+) 525 WP_001015120.1 shikimate kinase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36955.99 Da        Isoelectric Point: 8.6529

>NTDB_id=859233 Q3V64_RS06160 WP_031587486.1 1218915..1219889(+) (comGA) [Staphylococcus aureus strain SA26-SX]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKADVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=859233 Q3V64_RS06160 WP_031587486.1 1218915..1219889(+) (comGA) [Staphylococcus aureus strain SA26-SX]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGATGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.691

100

0.997
  comGA Staphylococcus aureus N315

99.691

100

0.997