Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   Q3V64_RS06180 Genome accession   NZ_CP130517
Coordinates   1221667..1221966 (+) Length   99 a.a.
NCBI ID   WP_000844413.1    Uniprot ID   X5E258
Organism   Staphylococcus aureus strain SA26-SX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1222479..1223650 1221667..1221966 flank 513


Gene organization within MGE regions


Location: 1221667..1223650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V64_RS06180 comGE 1221667..1221966 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  Q3V64_RS06185 comGF 1221884..1222381 (+) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q3V64_RS06190 - 1222479..1223650 (-) 1172 Protein_1184 IS256 family transposase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11093.20 Da        Isoelectric Point: 9.9215

>NTDB_id=859237 Q3V64_RS06180 WP_000844413.1 1221667..1221966(+) (comGE) [Staphylococcus aureus strain SA26-SX]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=859237 Q3V64_RS06180 WP_000844413.1 1221667..1221966(+) (comGE) [Staphylococcus aureus strain SA26-SX]
ATGAAAAGCTATAAGTGTAAAGGATCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAGTATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5E258

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus MW2

86.842

100

1
  comGE Staphylococcus aureus N315

98.99

100

0.99