Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Q3V64_RS05935 Genome accession   NZ_CP130517
Coordinates   1174309..1174995 (+) Length   228 a.a.
NCBI ID   WP_072361794.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA26-SX     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1169309..1179995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V64_RS05900 yqeH 1169836..1170936 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  Q3V64_RS05905 aroE 1170950..1171756 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  Q3V64_RS05910 yhbY 1171760..1172050 (+) 291 WP_000627815.1 ribosome assembly RNA-binding protein YhbY -
  Q3V64_RS05915 nadD 1172053..1172622 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  Q3V64_RS05920 yqeK 1172612..1173196 (+) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  Q3V64_RS05925 rsfS 1173197..1173550 (+) 354 WP_001088020.1 ribosome silencing factor -
  Q3V64_RS05930 - 1173553..1174269 (+) 717 WP_000084822.1 class I SAM-dependent methyltransferase -
  Q3V64_RS05935 comEA 1174309..1174995 (+) 687 WP_072361794.1 ComEA family DNA-binding protein Machinery gene
  Q3V64_RS05940 - 1175087..1175548 (+) 462 WP_000439693.1 ComE operon protein 2 -
  Q3V64_RS05945 comEC 1175553..1177754 (+) 2202 WP_025174327.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q3V64_RS05950 holA 1177811..1178785 (+) 975 WP_031587652.1 DNA polymerase III subunit delta -
  Q3V64_RS05955 rpsT 1178830..1179081 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=859230 Q3V64_RS05935 WP_072361794.1 1174309..1174995(+) (comEA) [Staphylococcus aureus strain SA26-SX]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=859230 Q3V64_RS05935 WP_072361794.1 1174309..1174995(+) (comEA) [Staphylococcus aureus strain SA26-SX]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

97.797

99.561

0.974