Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V64_RS03435 Genome accession   NZ_CP130517
Coordinates   693422..693817 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA26-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 688422..698817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V64_RS03405 - 689680..690084 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  Q3V64_RS03410 - 690422..690514 (+) 93 WP_001790611.1 hypothetical protein -
  Q3V64_RS03415 - 690646..690879 (+) 234 WP_000384523.1 DUF1146 family protein -
  Q3V64_RS03420 murA 690990..692255 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V64_RS03425 fabZ 692289..692729 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V64_RS03430 - 692788..693228 (-) 441 WP_000846746.1 YwpF-like family protein -
  Q3V64_RS03435 ssb 693422..693817 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V64_RS03440 sceD 694205..694900 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  Q3V64_RS03445 tenA 695424..696113 (+) 690 WP_000396077.1 thiaminase II -
  Q3V64_RS03450 thiD 696106..696936 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V64_RS03455 thiM 696920..697720 (+) 801 WP_031590212.1 hydroxyethylthiazole kinase -
  Q3V64_RS03460 thiE 697713..698354 (+) 642 WP_000483155.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=859219 Q3V64_RS03435 WP_000932694.1 693422..693817(+) (ssb) [Staphylococcus aureus strain SA26-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=859219 Q3V64_RS03435 WP_000932694.1 693422..693817(+) (ssb) [Staphylococcus aureus strain SA26-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992