Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V60_RS10860 Genome accession   NZ_CP130516
Coordinates   2159484..2159879 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA27-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2154484..2164879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V60_RS10835 thiE 2155083..2155724 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  Q3V60_RS10840 thiM 2155726..2156517 (-) 792 WP_077156136.1 hydroxyethylthiazole kinase -
  Q3V60_RS10845 thiD 2156501..2157331 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V60_RS10850 tenA 2157324..2158013 (-) 690 WP_000396077.1 thiaminase II -
  Q3V60_RS10855 sceD 2158400..2159095 (-) 696 WP_000752004.1 lytic transglycosylase SceD -
  Q3V60_RS10860 ssb 2159484..2159879 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V60_RS10865 - 2160073..2160513 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V60_RS10870 fabZ 2160572..2161012 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V60_RS10875 murA 2161046..2162311 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V60_RS10880 - 2162422..2162655 (-) 234 WP_000384523.1 DUF1146 family protein -
  Q3V60_RS10885 - 2162787..2162879 (-) 93 WP_001790611.1 hypothetical protein -
  Q3V60_RS10890 - 2163217..2163621 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=859208 Q3V60_RS10860 WP_000932694.1 2159484..2159879(-) (ssb) [Staphylococcus aureus strain SA27-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=859208 Q3V60_RS10860 WP_000932694.1 2159484..2159879(-) (ssb) [Staphylococcus aureus strain SA27-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992