Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Q3V60_RS07810 Genome accession   NZ_CP130516
Coordinates   1618085..1618771 (-) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA27-SX     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1613085..1623771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V60_RS07790 rpsT 1613999..1614250 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  Q3V60_RS07795 holA 1614295..1615269 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  Q3V60_RS07800 comEC 1615326..1617527 (-) 2202 WP_172838642.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q3V60_RS07805 - 1617532..1617993 (-) 462 WP_000439693.1 ComE operon protein 2 -
  Q3V60_RS07810 comEA 1618085..1618771 (-) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  Q3V60_RS07815 - 1618811..1619527 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  Q3V60_RS07820 rsfS 1619530..1619883 (-) 354 WP_001088020.1 ribosome silencing factor -
  Q3V60_RS07825 yqeK 1619884..1620468 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  Q3V60_RS07830 nadD 1620458..1621027 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  Q3V60_RS07835 yhbY 1621030..1621320 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  Q3V60_RS07840 aroE 1621324..1622130 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  Q3V60_RS07845 yqeH 1622144..1623244 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=859195 Q3V60_RS07810 WP_072353822.1 1618085..1618771(-) (comEA) [Staphylococcus aureus strain SA27-SX]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=859195 Q3V60_RS07810 WP_072353822.1 1618085..1618771(-) (comEA) [Staphylococcus aureus strain SA27-SX]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978