Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   Q3V60_RS04705 Genome accession   NZ_CP130516
Coordinates   964635..965621 (+) Length   328 a.a.
NCBI ID   WP_000959284.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA27-SX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 959635..970621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V60_RS04680 opp4B 959848..960810 (+) 963 WP_000239818.1 oligopeptide ABC transporter permease -
  Q3V60_RS04685 opp4C 960822..961703 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  Q3V60_RS04690 trpS 961745..962734 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  Q3V60_RS04695 spxA 963029..963424 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  Q3V60_RS04700 mecA 963795..964514 (+) 720 WP_001217728.1 adaptor protein MecA -
  Q3V60_RS04705 coiA 964635..965621 (+) 987 WP_000959284.1 competence protein CoiA Machinery gene
  Q3V60_RS04710 pepF 965669..967477 (+) 1809 WP_000082728.1 oligoendopeptidase F -
  Q3V60_RS04715 yjbH 967938..968744 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  Q3V60_RS04720 - 968767..969132 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  Q3V60_RS04725 - 969236..969829 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  Q3V60_RS04730 - 970015..970362 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38810.39 Da        Isoelectric Point: 9.5881

>NTDB_id=859180 Q3V60_RS04705 WP_000959284.1 964635..965621(+) (coiA) [Staphylococcus aureus strain SA27-SX]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=859180 Q3V60_RS04705 WP_000959284.1 964635..965621(+) (coiA) [Staphylococcus aureus strain SA27-SX]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTATTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982