Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q3V60_RS02705 Genome accession   NZ_CP130516
Coordinates   563387..563956 (+) Length   189 a.a.
NCBI ID   WP_000872881.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA27-SX     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 558387..568956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V60_RS02680 cysE 559600..560247 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  Q3V60_RS02685 cysS 560231..561631 (+) 1401 WP_000631966.1 cysteine--tRNA ligase -
  Q3V60_RS02690 - 561624..562028 (+) 405 WP_000370185.1 Mini-ribonuclease 3 -
  Q3V60_RS02695 rlmB 562036..562782 (+) 747 WP_000390329.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3V60_RS02700 - 562782..563306 (+) 525 WP_000664732.1 NYN domain-containing protein -
  Q3V60_RS02705 sigH 563387..563956 (+) 570 WP_000872881.1 sigma-70 family RNA polymerase sigma factor Regulator
  Q3V60_RS02710 rpmG 564071..564214 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q3V60_RS02715 secE 564270..564452 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q3V60_RS02720 nusG 564465..565013 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q3V60_RS02725 rplK 565194..565616 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q3V60_RS02730 rplA 565824..566516 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q3V60_RS02735 rplJ 566788..567288 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  Q3V60_RS02740 rplL 567331..567699 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q3V60_RS02745 - 567874..568482 (+) 609 WP_000020306.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23096.97 Da        Isoelectric Point: 9.6924

>NTDB_id=859175 Q3V60_RS02705 WP_000872881.1 563387..563956(+) (sigH) [Staphylococcus aureus strain SA27-SX]
MKYDLTTQDSTIKRNNAINDKDFEKLVMNLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=859175 Q3V60_RS02705 WP_000872881.1 563387..563956(+) (sigH) [Staphylococcus aureus strain SA27-SX]
TTGAAATATGATTTGACAACGCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGAATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTTATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979