Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   Q3V80_RS04335 Genome accession   NZ_CP130515
Coordinates   920990..921976 (+) Length   328 a.a.
NCBI ID   WP_000959286.1    Uniprot ID   A0AAX2MRT0
Organism   Staphylococcus aureus strain SA28-SX     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 915990..926976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V80_RS04310 - 916823..917332 (+) 510 Protein_837 transposase -
  Q3V80_RS04315 trpS 917358..918347 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -
  Q3V80_RS04320 spxA 918642..919037 (+) 396 WP_000258001.1 transcriptional regulator SpxA -
  Q3V80_RS04325 tnpA 919249..919734 (+) 486 WP_000093392.1 IS200/IS605 family transposase -
  Q3V80_RS04330 mecA 920150..920869 (+) 720 WP_001217724.1 adaptor protein MecA -
  Q3V80_RS04335 coiA 920990..921976 (+) 987 WP_000959286.1 competence protein CoiA Machinery gene
  Q3V80_RS04340 pepF 922024..923832 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  Q3V80_RS04345 yjbH 924292..925098 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  Q3V80_RS04350 - 925121..925486 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  Q3V80_RS04355 - 925590..926183 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  Q3V80_RS04360 - 926369..926716 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38770.45 Da        Isoelectric Point: 9.5881

>NTDB_id=859138 Q3V80_RS04335 WP_000959286.1 920990..921976(+) (coiA) [Staphylococcus aureus strain SA28-SX]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLLLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=859138 Q3V80_RS04335 WP_000959286.1 920990..921976(+) (coiA) [Staphylococcus aureus strain SA28-SX]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTTGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATTGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

99.085

100

0.991
  coiA Staphylococcus aureus MW2

97.866

100

0.979