Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V79_RS11035 Genome accession   NZ_CP130513
Coordinates   2195924..2196319 (-) Length   131 a.a.
NCBI ID   WP_000932692.1    Uniprot ID   A0A641A2P1
Organism   Staphylococcus aureus strain SA29-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2190924..2201319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V79_RS11010 thiE 2191386..2192027 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  Q3V79_RS11015 thiM 2192020..2192820 (-) 801 WP_234743520.1 hydroxyethylthiazole kinase -
  Q3V79_RS11020 thiD 2192804..2193634 (-) 831 WP_153906447.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V79_RS11025 tenA 2193627..2194316 (-) 690 WP_000396077.1 thiaminase II -
  Q3V79_RS11030 sceD 2194840..2195535 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  Q3V79_RS11035 ssb 2195924..2196319 (-) 396 WP_000932692.1 single-stranded DNA-binding protein Machinery gene
  Q3V79_RS11040 - 2196513..2196953 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V79_RS11045 fabZ 2197011..2197451 (-) 441 WP_153906446.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V79_RS11050 murA 2197485..2198750 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V79_RS11055 - 2198861..2199094 (-) 234 WP_000384523.1 DUF1146 family protein -
  Q3V79_RS11060 - 2199226..2199318 (-) 93 WP_031864518.1 hypothetical protein -
  Q3V79_RS11065 - 2199656..2200060 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15114.16 Da        Isoelectric Point: 5.2452

>NTDB_id=859123 Q3V79_RS11035 WP_000932692.1 2195924..2196319(-) (ssb) [Staphylococcus aureus strain SA29-SX]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=859123 Q3V79_RS11035 WP_000932692.1 2195924..2196319(-) (ssb) [Staphylococcus aureus strain SA29-SX]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

100

100

1
  ssb Staphylococcus aureus N315

99.237

100

0.992