Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q3V79_RS02635 Genome accession   NZ_CP130513
Coordinates   562489..563058 (+) Length   189 a.a.
NCBI ID   WP_000872877.1    Uniprot ID   A0A641A2F3
Organism   Staphylococcus aureus strain SA29-SX     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 557489..568058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V79_RS02610 cysE 558702..559349 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  Q3V79_RS02615 cysS 559333..560733 (+) 1401 WP_000631973.1 cysteine--tRNA ligase -
  Q3V79_RS02620 - 560726..561130 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  Q3V79_RS02625 rlmB 561138..561884 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3V79_RS02630 - 561884..562408 (+) 525 WP_000664738.1 NYN domain-containing protein -
  Q3V79_RS02635 sigH 562489..563058 (+) 570 WP_000872877.1 sigma-70 family RNA polymerase sigma factor Regulator
  Q3V79_RS02640 rpmG 563173..563316 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q3V79_RS02645 secE 563372..563554 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q3V79_RS02650 nusG 563567..564115 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q3V79_RS02655 rplK 564296..564718 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q3V79_RS02660 rplA 564926..565618 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q3V79_RS02665 rplJ 565890..566390 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  Q3V79_RS02670 rplL 566433..566801 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q3V79_RS02675 - 566976..567584 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=859090 Q3V79_RS02635 WP_000872877.1 562489..563058(+) (sigH) [Staphylococcus aureus strain SA29-SX]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSVFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=859090 Q3V79_RS02635 WP_000872877.1 562489..563058(+) (sigH) [Staphylococcus aureus strain SA29-SX]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGTATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

100

100

1
  sigH Staphylococcus aureus N315

97.884

100

0.979