Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q3V69_RS02465 Genome accession   NZ_CP130510
Coordinates   524595..525164 (+) Length   189 a.a.
NCBI ID   WP_000872882.1    Uniprot ID   A0A7U7EXA1
Organism   Staphylococcus aureus strain SA31-SX     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 519595..530164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V69_RS02440 cysE 520808..521455 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  Q3V69_RS02445 cysS 521439..522839 (+) 1401 WP_000631969.1 cysteine--tRNA ligase -
  Q3V69_RS02450 - 522832..523236 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  Q3V69_RS02455 rlmB 523244..523990 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3V69_RS02460 - 523990..524514 (+) 525 WP_000664737.1 NYN domain-containing protein -
  Q3V69_RS02465 sigH 524595..525164 (+) 570 WP_000872882.1 sigma-70 family RNA polymerase sigma factor Regulator
  Q3V69_RS02470 rpmG 525279..525422 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q3V69_RS02475 secE 525478..525660 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q3V69_RS02480 nusG 525673..526221 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q3V69_RS02485 rplK 526402..526824 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q3V69_RS02490 rplA 527032..527724 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q3V69_RS02495 rplJ 527996..528496 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  Q3V69_RS02500 rplL 528539..528907 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q3V69_RS02505 - 529082..529690 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.91 Da        Isoelectric Point: 9.4170

>NTDB_id=859001 Q3V69_RS02465 WP_000872882.1 524595..525164(+) (sigH) [Staphylococcus aureus strain SA31-SX]
MKYDLTTQDSTIKRNNSINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=859001 Q3V69_RS02465 WP_000872882.1 524595..525164(+) (sigH) [Staphylococcus aureus strain SA31-SX]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATTCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

100

100

1
  sigH Staphylococcus aureus MW2

97.884

100

0.979