Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Q3V55_RS08130 Genome accession   NZ_CP130508
Coordinates   1680251..1680937 (-) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA33-SX     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1675251..1685937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V55_RS08110 rpsT 1676165..1676416 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  Q3V55_RS08115 holA 1676461..1677435 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  Q3V55_RS08120 comEC 1677492..1679693 (-) 2202 WP_000967504.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q3V55_RS08125 - 1679698..1680159 (-) 462 WP_000439693.1 ComE operon protein 2 -
  Q3V55_RS08130 comEA 1680251..1680937 (-) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  Q3V55_RS08135 - 1680977..1681693 (-) 717 WP_000942456.1 class I SAM-dependent methyltransferase -
  Q3V55_RS08140 rsfS 1681696..1682049 (-) 354 WP_001088020.1 ribosome silencing factor -
  Q3V55_RS08145 yqeK 1682050..1682634 (-) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  Q3V55_RS08150 nadD 1682624..1683193 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  Q3V55_RS08155 yhbY 1683196..1683486 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  Q3V55_RS08160 aroE 1683490..1684296 (-) 807 WP_303073706.1 shikimate dehydrogenase -
  Q3V55_RS08165 yqeH 1684310..1685410 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=858934 Q3V55_RS08130 WP_078055782.1 1680251..1680937(-) (comEA) [Staphylococcus aureus strain SA33-SX]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=858934 Q3V55_RS08130 WP_078055782.1 1680251..1680937(-) (comEA) [Staphylococcus aureus strain SA33-SX]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982