Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V81_RS10670 Genome accession   NZ_CP130505
Coordinates   2137836..2138231 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA35-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2132836..2143231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V81_RS10645 thiE 2133435..2134076 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  Q3V81_RS10650 thiM 2134078..2134869 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  Q3V81_RS10655 thiD 2134853..2135683 (-) 831 WP_234718397.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V81_RS10660 tenA 2135676..2136365 (-) 690 WP_000396077.1 thiaminase II -
  Q3V81_RS10665 sceD 2136752..2137447 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  Q3V81_RS10670 ssb 2137836..2138231 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V81_RS10675 - 2138425..2138865 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V81_RS10680 fabZ 2138924..2139364 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V81_RS10685 murA 2139398..2140663 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V81_RS10690 - 2140774..2141007 (-) 234 WP_000384523.1 DUF1146 family protein -
  Q3V81_RS10695 - 2141139..2141231 (-) 93 WP_001790611.1 hypothetical protein -
  Q3V81_RS10700 - 2141569..2141973 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=858861 Q3V81_RS10670 WP_000932694.1 2137836..2138231(-) (ssb) [Staphylococcus aureus strain SA35-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=858861 Q3V81_RS10670 WP_000932694.1 2137836..2138231(-) (ssb) [Staphylococcus aureus strain SA35-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992