Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q3V77_RS02565 Genome accession   NZ_CP130503
Coordinates   552426..552995 (+) Length   189 a.a.
NCBI ID   WP_155560183.1    Uniprot ID   A0A6A9GZQ3
Organism   Staphylococcus aureus strain SA36-SX     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 547426..557995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V77_RS02540 cysE 548639..549286 (+) 648 WP_117207899.1 serine O-acetyltransferase -
  Q3V77_RS02545 cysS 549270..550670 (+) 1401 WP_000631977.1 cysteine--tRNA ligase -
  Q3V77_RS02550 - 550663..551067 (+) 405 WP_000370186.1 Mini-ribonuclease 3 -
  Q3V77_RS02555 rlmB 551075..551821 (+) 747 WP_000390339.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3V77_RS02560 - 551821..552345 (+) 525 WP_000664738.1 NYN domain-containing protein -
  Q3V77_RS02565 sigH 552426..552995 (+) 570 WP_155560183.1 sigma-70 family RNA polymerase sigma factor Regulator
  Q3V77_RS02570 rpmG 553110..553253 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q3V77_RS02575 secE 553309..553491 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q3V77_RS02580 nusG 553504..554052 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q3V77_RS02585 rplK 554233..554655 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q3V77_RS02590 rplA 554863..555555 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q3V77_RS02595 rplJ 555827..556327 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  Q3V77_RS02600 rplL 556370..556738 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q3V77_RS02605 - 556913..557521 (+) 609 WP_000020296.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23078.94 Da        Isoelectric Point: 9.6924

>NTDB_id=858786 Q3V77_RS02565 WP_155560183.1 552426..552995(+) (sigH) [Staphylococcus aureus strain SA36-SX]
MKYNLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=858786 Q3V77_RS02565 WP_155560183.1 552426..552995(+) (sigH) [Staphylococcus aureus strain SA36-SX]
TTGAAATATAATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A9GZQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974